Survey on Modelling Methods Applicable to Gene Regulatory Network

نویسندگان

  • Chanda Panse
  • Manali Kshirsagar
چکیده

Gene Regulatory Network (GRN) plays an important role in knowing insight of cellular life cycle. It gives information about at which different environmental conditions genes of particular interest get over expressed or under expressed. Modelling of GRN is nothing but finding interactive relationships between genes. Interaction can be positive or negative. For inference of GRN, time series data provided by Microarray technology is used. Key factors to be considered while constructing GRN are scalability, robustness, reliability and maximum detection of true positive interactions between genes. This paper gives detailed technical review of existing methods applied for building of GRN along with scope for future work.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Modeling gene regulatory networks: Classical models, optimal perturbation for identification of network

Deep understanding of molecular biology has allowed emergence of new technologies like DNA decryption.  On the other hand, advancements of molecular biology have made manipulation of genetic systems simpler than ever; this promises extraordinary progress in biological, medical and biotechnological applications.  This is not an unrealistic goal since genes which are regulated by gene regulatory ...

متن کامل

Key Genes Involved in Wheat Response to Salinity Stress and Mapping their Gene Network

Extended Abstract Introduction and Objective: Considering the importance of salinity in wheat and the multigene nature of this trait, the present study was conducted to investigate the expression of key genes involved in the response of wheat to this stress and to create their network. Material and Methods: In this study, the expression of key genes (HKT, DREB, bZIP, NAC, and WARKY) involved...

متن کامل

Gene Regulation Network Based Analysis Associated with TGF-beta Stimulation in Lung Adenocarcinoma Cells

Background: Transforming growth factor (TGF)-β is over-expressed in a wide variety of cancers such as lung adenocarcinoma. TGF-β plays a major role in cancer progression through regulating cancer cell proliferation and remodeling of the tumor micro-environment. However, it is still a great challenge to explain the phenotypic effects caused by TGF-β stimulation and the effect of TGF-β stimulatio...

متن کامل

Network-based transcriptome analysis in salt tolerant and salt sensitive maize (Zea mays L.) genotypes

Identification of genes involved in salinity stress tolerance provides deeper insight into molecular mechanisms underlying salinity tolerance in maize. The present study was conducted in the faculty of agriculture of Urmia university, Iran, in 2018, with the aim of identifying genetic differences between two maize genotypes in tolerance to salinity stress, and the results of gene expression wer...

متن کامل

Bioinformatics identification of miRNA-mRNA regulatory network contributing to lung cancer invasion

Background: Over the past 15 years, significant insights have been gained into the roles of miRNAs in cancer. In various cancers, miRNAs can act as oncogenes, tumor suppressors, or control the metastasis process by modulating the expression of numerous target genes. This study is aimed at determining molecular network of miRNA-mRNA regulating lung cancer invasion, by bioinformatics approaches. ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • CoRR

دوره abs/1310.2361  شماره 

صفحات  -

تاریخ انتشار 2013